About us

Cilia-AI combines the expertise of 9 academic, 2 industrial, and 2 non-profit sector partners that are all motivated to train a new, pan-European cohort of DCs to become the next generation of independent cilia researchers.

The Cilia-AI consortium is dedicated to linking genotype-to-phenotype relationships in the ciliopathies, by:

🔬 Unravel variant-function relationships in cilia biology. 
🔬 Enhance molecular and cellular profiling of ciliopathy disease states. 
🔬 Leverage machine learning technology to advance imaging and analysis at multiple scales.

Understanding how cilia work, both in health and in disease, requires a blend of expertise from many different fields. We use next-generation technologies like:

  • AI-assisted structural biology to understand the detailed structures of cilia.

  • Quantitative proteomics to analyze the proteins involved.

  • Whole exome and long-range whole genome sequencing to investigate genetic factors.

  • Single cell- and single nucleus, and spatial transcriptomics to study gene expression at the single-cell level.

  • Super-resolution microscopy and cryo-electron tomography, combined with expansion microscopy, to obtain highly detailed imaging data.

All these techniques generate large amounts of data, and integrating this information to gain meaningful insights is challenging. This is where machine learning, a key area of artificial intelligence, comes into play. Machine learning helps us process and analyze these complex datasets, integrating data from different disciplines, and extracting valuable insights for biomedical research.

Research Focus Areas & PhD Positions:

  1. Ciliary Molecular and Structural Function (WP1)

    Investigate how cilium function is determined by the structure, organisation and molecular variation.

    📌 4 PhD positions DC5, DC6, DC10, DC13

    Ciliary Biogenesis and Homeostasis (WP2) 

    Examine cell- and organelle-specific processes critical for cilia formation and maintenance.

    📌 5 PhD positions DC4, DC7, DC8, DC11, DC12

    Cilium in Organ Development and Physiology (WP3)

    Decipher the cilium’s essential role in regulation of organ development and physiology.

    📌 5 PhD positions DC1, DC2, DC3, DC9, ADC

     

    All three WPs will be linked by a shared relevance to defects in disease, the ciliopathies.

Radboudumc Nijmegen, The Netherlands

Ronald Roepman, DC1
Søren Christensen, DC3
Martijn Huijnen, DC2
Lotte Pedersen, DC4
Marijn Stokman, DC13

University of Copenhagen, Denmark

Aarhus University, Denmark

Esben Lorentzen, DC5

University of Heidelberg, Germany

Rob Russell, DC6
Anna Akhmanova, DC11

University of Edinburgh, United Kingdom

Pleasantine Mill, ADC

Utrecht University, The Netherlands

University of Tübingen, Germany

Karsten Boldt, DC9

Human Technopole Milan, Italy

Gaia Pigino, DC7

Institut Imagine Paris, France

Alexandre Benmerah, DC8
Florian Jug, DC12
Sophie Saunier, DC10